Foodomics approaches to facilitate the verification of the authenticity of foods: a possible strategy to screen, validate, and standardize food matrices.

• Nurpudji Astuti Taslim ^[1] ; Fahrul Nurkolis ^[4] ; Hardinsyah Hardinsyah ^[5] ; Vincentius Mario Yusuf ^[6] ; William Ben Gunawan ^[2] ; Mrinal Samtiya ^[3] ; Nelly Mayulu ^[7] ; Youla A. Assa ^[8] ; Trina Ekawati Tallei ^[7]
  1. [1] Hasanuddin University

     Hasanuddin University

     Indonesia

     
  2. [2] Diponegoro University

     Diponegoro University

     Indonesia

     
  3. [3] Central University of Haryana

     Central University of Haryana

     India

     
  4. [4] Biological Sciences, State Islamic University of Sunan Kalijaga (UIN Sunan Kalijaga), Yogyakarta, Indonesia.
  5. [5] Applied Nutrition Division, Department of Community Nutrition, Faculty of Human Ecology, IPB University, Bogor, Indonesia
  6. [6] Medical Programme, Faculty of Medicine, Brawijaya University, Malang, Indonesia
  7. [7] Department of Biology, Faculty of Mathematics and Natural Sciences, Sam Ratulangi University, Manado, Indonesia
  8. [8] School of Medicine, Sam Ratulangi University, Manado, Indonesia

  Mostrar afiliaciones +
• Localización: Nutrición clínica y dietética hospitalaria, ISSN 0211-6057, Vol. 43, Nº. 1, 2023, págs. 73-80
• Idioma: inglés
• Enlaces
  • Texto completo
• Resumen

  • Introduction: The complexity of globalization, includingthe global food trade market, has the side effect that variousraw foodstuffs are vulnerable to intentional and unintentionaladulteration. However, food validation and standardizationapproaches are still unclear and challenging and need to beexplored. Objective: Through this opinion review article, the authorwould like to introduce a foodomics approach (Food, -Omics)to facilitate integrated food authenticity verification throughbiosensors. Method: This approach was based on literature review ofpotentially suitable and offers methods of Foodomics as theycombine biological analysis methods spanning genomics,transcriptomics, proteomics, and metabolomics. Meanwhile,several subdisciplines of Foodomics, such as metallomics,volatomics, and lipidomics, which are considered feasible tofacilitate the verification of food authenticity, are also ex-plored and reviewed in this critical opinion. Result: Foodomics consists of four main omics technolo-gies, namely genomics, transcriptomics, proteomics, andmetabolomics. This is an integration of promising approachesto provide standardized food matrices, thus becoming themost likely strategy to verify the authenticity of food.However, after trying to uncover this food authenticationproblem and provide a Foodomics approach, we felt the needfor synergies in building a database capable of storing foodmatrices in the form of unique genes, bioactive peptides, andsecondary metabolites. We hope that through this opinion re-view article, the target database can be formed, althoughdatabases such as MEDLINE and PubChem have provided thisdata facility. Conclusion: In particular, we suggest the development ofnanobiosensors that should undoubtedly be environmentallyfriendly and portable (making use of smartphones) and cre-ating a cloud database capable of storing food matrices in theform of unique genes, bioactive peptides, and secondarymetabolites, integrated with smartphone biosensors. Finally,as a result, the researcher tries to answer this database prob-lem so that foodomics integrated with the database can solvethe problem of detecting fraud and counterfeiting of food-stuffs

• Referencias bibliográficas
  • Massaro A, Negro A, Bragolusi M, Miano B, Tata A, Suman M, et al. Oregano authentication by mid-level data fusion of chemical fingerprint...
  • Esteki M, Regueiro J, Simal-Gándara J. Tackling Fraudsters with Global Strategies to Expose Fraud in the Food Chain. Vol. 18, Comprehensive...
  • European Parliament resolution of 14 January 2014 on the food crisis, fraud in the food chain and the control thereof (2013/2091(INI)). Eur...
  • Herrero M, Simõ C, García-Cañas V, Ibáñez E, Cifuentes A. Foodomics: MS-based strategies in modern food science and nutrition. Vol. 31, Mass...
  • Capozzi F, Bordoni A. Foodomics: A new comprehensive approach to food and nutrition. Genes Nutr. 2013;8(1):1–4.
  • Balkir P, Kemahlioglu K, Yucel U. Foodomics: A new approach in food quality and safety. Vol. 108, Trends in Food Science and Technology. 2021....
  • Valdés A, Álvarez-Rivera G, Socas-Rodríguez B, Herrero M, Ibáñez E, Cifuentes A. Foodomics: Analytical Opportunities and Challenges. Vol....
  • Bustamante CD, De La Vega FM, Burchard EG. Genomics for the world. Vol. 475, Nature. Nature Publishing Group; 2011. p. 163–5.
  • Allendorf FW, Funk WC, Aitken SN, Byrne M, Luikart G, Antunes A. Conservation and the Genomics of Populations. Conservation and the Genomics...
  • Seehausen O, Butlin RK, Keller I, Wagner CE, Boughman JW, Hohenlohe PA, et al. Genomics and the origin of species. Vol. 15, Nature Reviews...
  • Van der Ryn S, Cowan S. An Introduction to Ecological Design. In: The Ecological Design and Planning Reader. 2014. p. 191–202.
  • Butler A, Hoffman P, Smibert P, Papalexi E, Satija R. Integrating single-cell transcriptomic data across different conditions, technologies,...
  • Satija R, Farrell JA, Gennert D, Schier AF, Regev A. Spatial reconstruction of single-cell gene expression data. Nat Biotechnol. 2015 May;33(5):495–502.
  • Bocklandt S, Hastie A, Cao H. Bionano Genome Mapping: High-Throughput, Ultra-Long Molecule Genome Analysis System for Precision Genome Assembly...
  • Van Andel TR, Meyer RS, Aflitos SA, Carney JA, Veltman MA, Copetti D, et al. Tracing ancestor rice of Suriname Maroons back to its African...
  • van Andel T. African rice (Oryza glaberrima Steud.): Lost crop of the enslaved Africans discovered in suriname1. Econ Bot. 2010 Mar;64(1):1–10.
  • Wu Q, Zhang Y, Yang Q, Yuan N, Zhang W. Review of electrochemical DNA biosensors for detecting food borne pathogens. Vol. 19, Sensors (Switzerland)....
  • Vetrone SA, Huarng MC, Alocilja EC. Detection of Non-PCR amplified S. enteritidis genomic DNA from food matrices using a gold-nanoparticle...
  • Böhme K, Calo-Mata P, Barros-Velázquez J, Ortea I. Review of Recent DNA-Based Methods for Main Food-Authentication Topics. J Agric Food Chem....
  • Li C, Zhu Y, Guo X, Sun C, Luo H, Song J, et al. Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence...
  • Wolf JBW. Principles of transcriptome analysis and gene expression quantification: An RNA-seq tutorial. Mol Ecol Resour. 2013 Jul;13(4):559–72.
  • Kleter GA. Food safety assessment of crops engineered with RNA interference and other methods to modulate expression of endogenous and plant...
  • Cheng YH, Liu SJ, Jiang JH. Enzyme-free electrochemical biosensor based on amplification of proximity-dependent surface hybridization chain...
  • Su Y, Hammond MC. RNA-based fluorescent biosensors for live cell imaging of small molecules and RNAs. Vol. 63, Current Opinion in Biotechnology....
  • Li L, Zhang M, Chen W. Gold nanoparticle-based colorimetric and electrochemical sensors for the detection of illegal food additives. Vol....
  • Wu Y, Dong Y, Shi Y, Yang H, Zhang J, Khan MR, et al. CRISPR-Cas12-Based Rapid Authentication of Halal Food. J Agric Food Chem. 2021 Sep;69(35):10321–8.
  • Aslam B, Basit M, Nisar MA, Khurshid M, Rasool MH. Proteomics: Technologies and their applications. Vol. 55, Journal of Chromatographic Science....
  • Faria SS, Morris CFM, Silva AR, Fonseca MP, Forget P, Castro MS, et al. A Timely shift from shotgun to targeted proteomics and how it can...
  • Macklin A, Khan S, Kislinger T. Recent advances in mass spectrometry based clinical proteomics: Applications to cancer research. Vol. 17,...
  • Duan G, Walther D. The Roles of Post-translational Modifications in the Context of Protein Interaction Networks. PLoS Comput Biol. 2015;11(2).
  • Su MG, Weng JTY, Hsu JBK, Huang KY, Chi YH, Lee TY. Investigation and identification of functional post-translational modification sites associated...
  • Wang J, Yin T, Xiao X, He D, Xue Z, Jiang X, et al. StraPep: A structure database of bioactive peptides. Database. 2018 Jan;2018(2018).
  • Ortea I, Cañas B, Calo-Mata P, Barros-Velázquez J, Gallardo JM. Identification of commercial prawn and shrimp species of food interest by...
  • Artigaud S, Lavaud R, Thébault J, Jean F, Strand Ø, Strohmeier T, et al. Proteomic-based comparison between populations of the great scallop,...
  • Fu J, Zhang Y, Wang Y, Zhang H, Liu J, Tang J, et al. Optimization of metabolomic data processing using NOREVA. Nat Protoc 2021 171. 2021...
  • Beisken S, Eiden M, Salek RM. Getting the right answers: Understanding metabolomics challenges. Expert Rev Mol Diagn. 2015 Jan;15(1):97–109.
  • reviews DW-P, 2019 undefined. Metabolomics for investigating physiological and pathophysiological processes. journals.physiology.org.
  • Citti C, Battisti UM, Braghiroli D, Ciccarella G, Schmid M, Vandelli MA, et al. A Metabolomic Approach Applied to a Liquid Chromatography...
  • Stella R, Mastrorilli E, Pretto T, Tata A, Piro R, Arcangeli G, et al. New strategies for the differentiation of fresh and frozen/thawed fish:...
  • Tata A, Massaro A, Riuzzi G, Lanza I, Bragolusi M, Negro A, et al. Ambient mass spectrometry for rapid authentication of milk from Alpine...
  • Cherng P, Wang M, Yang Y, Min J, Song Y, Tu J, et al. A wearable electrochemical biosensor for the monitoring of metabolites and nutrients....
  • Rafique B, Iqbal M, Mehmood T, Shaheen MA. Electrochemical DNA biosensors: a review. Sens Rev. 2019;39(1):34–50.
  • Tata A, Massaro A, Damiani T, Piro R, Dall’Asta C, Suman M. Detection of soft-refined oils in extra virgin olive oil using data fusion approaches...
  • Tata A, Pallante I, Zacometti C, Moressa A, Bragolusi M, Negro A, et al. Rapid, novel screening of toxicants in poison baits, and autopsy...
  • Zeinhom MMA, Wang Y, Song Y, Zhu MJ, Lin Y, Du D. A portable smart-phone device for rapid and sensitive detection of E. coli O157:H7 in Yoghurt...
  • Lee W Il, Shrivastava S, Duy LT, Yeong Kim B, Son YM, Lee NE. A smartphone imaging-based label-free and dual-wavelength fluorescent biosensor...